ABSTRACT: Ecuador is responsible for up to 70 % of the world’s production of fine flavor cocoa. Although fungal diseases have reduced cocoa production, eco–friendly alternatives have been implemented to control the spread of phytopathogens. This study aimed to explore the potential of endophytic strains isolated from fine flavor Nacional cocoa trees to synthetize compounds with antimicrobial and surface active properties. It was determined that under in vitro conditions, seven strains (DS03, DS07, DS18, DS23, DS31, DS34 and DS50) exhibited antifungal activity that inhibited the mycelial growth of Moniliophthora roreri and Moniliophthora perniciosa. The strains were identified based on their morphological (pattern forming Bacilli) and genetic characteristics using the 16S SSU rRNA gene sequences. Furthermore, we determined that the endophytic strains contained genes that encoded the lipopeptides Fengycin (fenA, fenB, fenC, fenE), Iturin (ituB, ituC, ituD), and Bacyllomicin D (bamC, bamD). The production of biosurfactant compounds was determined by a reduction in surface tension in the mineral medium. Additionally, the biosurfactant crude extract (BCE) was tested for its inhibitory activity against M. perniciosa and M. roreri. The minimal inhibitory concentration (MIC) was determined to be 0.07 and 0.035 mg mL−1, respectively, in both cases in a fungistatic action mode. The swelling granulation and fragmentation of both phytopathogens’ hyphae were observed using the BCE treatment. These results suggested the biocontrol capacity of the endophytic strains, which under in vitro conditions, have the ability to synthesize antifungal and surface active compounds that might be used as an ecological alternative in cocoa plants to prevent infection by phytopathogens.

RESUMEN La adaptabilidad de los hongos endófitos a sus hospedantes, los beneficios ecológicos que le brinda y los diversos mecanismos antagónicos contra plagas que poseen los convierten en una alternativa para el control biológico de enfermedades. Se determinó el potencial de 17 cepas de hongos endofíticos foliares (FEF) obtenidas de tejido sano de Theobroma cacao como candidatas para el control biológico de Moniliophthora roreri (MR) y M. perniciosa (MP). Se evaluaron: i) el micoparasitismo de los FEF frente a colonias de Moniliophthora spp., ii) la acción de los metabolitos crudos de los FEF en el crecimiento, y iii) la habilidad para recolonizar hojas sanas del hospedante mediante ensayos de hojas sueltas. Tres cepas de Lasiodiplodia theobromae fueron las más promisorias: Ec098, Ec151 and Ec157. Estas cepas inhibieron el crecimiento de MR y MP, tanto en el enfrentamiento de las colonias como mediante sus metabolitos y, adicionalmente, recolonizaron el hospedante entre el 80-100 % de las veces. Otras cepas mostraron valores destacados en un indicador, y no deseables en otros. Por ejemplo, la Ec035 (L. theobromae) mostró los niveles más altos de micoparasitismo contra ambos patógenos en la interacción de las colonias, y el segundo mejor por sus metabolitos, pero no pudo reinfectar el hospedante. La cepa Ec059 (Xylaria feejeensis) reinfectó 100 %, pero no mostró los atributos deseados de antagonismo. Por su parte, los metabolitos de Ec107 (Colletotrichum gloeosporioides s.l.) inhibieron a MR en un 60 %, pero también estimularon el crecimiento de MP. Ninguna cepa logró todas las características deseables para un agente de control biológico.

ABSTRACT The adaptability of endophytic fungi to their hosts, the ecological benefits that it provides and the various antagonistic mechanisms against pests make them an alternative for the biological control of diseases. The potential of 17 strains of foliar endophytic fungi (FEF) obtained from healthy Theobroma cacao tissue as candidates for the biological control of Moniliophthora roreri (MR) and M. perniciosa (MP) was determined. We evaluated: i) mycoparasitism of FEF against colonies of Moniliophthora spp., ii) the effects of crude metabolites of FEF on the pathogens' growth, and iii) the ability to recolonize healthy leaves of the host by leaf assays. Three strains of Lasiodiplodia theobromae were the most promising: Ec098, Ec151 and Ec157. These strains inhibited the growth of MR and MP, both in the confrontation of the colonies and by their metabolites and, additionally, recolonized the host between 80-100 % of the time. Other strains showed outstanding values i n one indicator, and not desirable in others. For example, Ec035 (L. theobromae) showed the highest levels of mycoparasitism against both pathogens in the interaction of the colonies, and the second best for its metabolites, but could not reinfect the host. Strain Ec059 (Xylaria feejeensis) reinfected 100 %, but did not show desirable attributes of antagonism. On the other hand, the metabolites of Ec107 (Colletotrichum gloeosporioides s.l.) inhibited MR by 60 %, but also stimulated the growth of MP. No strain achieved all desirable characteristics for a biological control agent.